NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207709_10249320

Scaffold Ga0207709_10249320


Overview

Basic Information
Taxon OID3300025935 Open in IMG/M
Scaffold IDGa0207709_10249320 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027031Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0207709_102493202F027031GGAVAAGRIPQVRQRSTYRRRPHVGREGRLRYAAAVTPSNGIQRWRTLVLVYPVLDARYGSGLSRKRARRVMGREERDVIMGIIDRLPATILDWSSGLTTLEPVDIIEVRRPVTSLSASGGGRWWVGPREVRPELGEVHATGGEYDSIYALWPCEPGVPQCGWGCTQGASDATLGAGFSSISTDHWHTLANDPDPEQGYVHEWLHQVEGLYRGLGLSEAQLPSLHDAAQFTSTRPLDEAPFGKSYAEYEAGSRTWSPWYRDYMTGRLRPAEGSGL

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